Just some added thoughts to consider, and I speak as a budget-minded guy with a smaller layout also:
1) While the Menard's cars are in the traditional category and attractively priced, the box car is larger than any traditional Lionel one. Their 4 bay hopper is on par with the Lionel one, but still bigger than what you might want. Lionel makes a smaller 2-bay hoper and an ore car, which is slightly smaller than any other brand. K-Line made rolling stock based on the older MARX tooling: These are 5000-series in number, and all these cars are slightly smaller and would look good on a small layout. There's a K-Line 5000 series 2-bay hopper that is even a little smaller than the Lionel one, which I happen to like.
These are also on a size par with the smaller postwar/MPC 027 sorts of rolling stock.
Another affordable consideration is the Industrial Rail cars, which are all smaller sized like the traditional Lionel O gauge cars. As a general rule, the MTH Railking cars are all larger in size and I avoid them, except for the MTH Rugged Rails cars. These cars have a 33- suffix number and are on a equal size to the Lionel traditional cars.
2) Any locomotive bought from a company no longer making trains may/will have potential problems with finding replacement parts in the future. This includes K-Line and RMT. But some of the starter set types of engines from K-Line sold in quantities, that you could buy a second one to have for parts. A place called Brasseur's bought the entire inventory of K-Line parts some years ago, but some of those parts are now sold out... like the coupler arm for the K-Line S-2 locomotive. The K-Line Plymouth switcher (pictured above) was a unique item and doesn't share parts with some of the other basic K-Line engines.
Still, the K-Line S-2's, MP-15's, RDC Budd Cars and the Alco FA's are pretty affordable, have just motors and reverse unit circuit board and share the same exact DC motor. The K-Line Collectors Club KCC MP-15 is probably one of the most affordable of the group because they made in excess of 20,000 of them (the number is likely higher, but that number was given to me mid-production year by someone at K-Line).
Added note: Though the basic K-Line / Lionel utilized Mabuchi brand DC motor look exactly identical, their gear teeth are different and so, NOT interchangeable. Plus side, most of these products sold in large enough quantities, that a second item could be affordable purchased to strip for parts.
3) If you have access to Lionel catalogs, pretty much any type of basic beginner starter type of engine made by Lionel from the late 1980's thru the early 2000's (pre-LionChief) will fit the bill on your description. They all have DC can motors and a circuit board reverse unit, though some Lionel ones came with a very basic electronic diesel horn. ANY OF THESE ARE AFFORDABLE as compared to other more modern engines.
There's a starter set NW-2 made in roads like (going by memory here) US Navy, US Coast Guard, B&M, Frisco, and others. This has a single DC motor power truck, but parts are still available.
There's what Lionel called a 44-ton switcher - really more of a center cab - which was made in Pennsy and Rock Island. Other than the cheap plastic handrails, the engine has two can motors.
Lionel made a bunch of Alco FA units for starter sets. The Santa Fe had a long production run. There was an Amtrak one too. New Haven also comes to mind. Sometime in the mid-1990's, these were made with a plastic instead of a sheet metal frame. The Reading and revised Amtrak come to mind as among the first with plastic frames.
Lionel made a slew of no-frills Industrial Switchers in the mid-1990's. Very basic (DC can motor and circuit board reverse unit), though I find it's useful to add some weight to these to pull a train of more than a couple cars.
There's also Williams and Williams by Bachmann. They make a version of the Lionel postwar 44 ton center cab. They also have their own version of the NW-2 switcher and their own version of the Lionel Alco FA. These are well made engines and affordable priced on the secondary market, though what the future holds for Williams is anyone's guess. This has been speculated on for years, but it sure does appear that Bachmann has little interest in the Williams line, but that's driven by the consumer.