First, I presume you are asking about the older Atlas freight cars from the mid-1970s. If so, I've used a couple of different solutions for mounting trucks from other manufacturers. The basic approach is to make a plug for the oversized holes in the frame. The holes have a step, or shoulder, so that the two prongs of the original pivot pin would snap over the shoulder to secure the truck. Other than machining a piece of brass rod to plug the hole in the frame, drilling a hole in the center of the plug, and tapping the hole for a 3-48 machine screw (which I've done), I think the easiest way to plug the hole is to use two sizes of common wood dowels. I think the sizes I used were 1/4" and 5/16". Measure the hole above and below the frame to make sure. Cut two pieces of the dowels the length of the two steps inside the hole. These will be short - less than 1/4" each. Using the hole a guide, glue the two pieces together inside the hole and set aside to dry. Using a file or sand paper, file the wood plug flush with the top and bottom of the frame. Find a wood screw that will fit through the bolster of your truck. Drill a pilot hole in the plug and attach the truck.
Doug