Remember that if you have six inches of clearance you probably have to get below another six inches of support. So you are really dealing with a twelve inch drop. Though I have 5% grades and I pull fifteen car trains up and down them all the time I fear you will be running into a real eastate problem even at my steep inclines.
Also, you are probably going to wont at lest 12 inches of clearance so you can have work access to the storage area. Now we a talking 18" drop and you really don't wont to go above a 3% grade unless as is my case you have no choice.
Let me predicate what I'm about to suggest with the fact that I never did this myself, but I got the idea from these pages and plan on trying it someday.
Build a long 3-1/2 wide siding along the longest part of your layout. It has to be long enough to accommodate your trains that are to be brought to the storage yard. Have that siding travel up and down like an elelvator. I think the author of the post said he got the idea from the Lionel Lift Bridge.
I know that there are many engineering issues that must be addressed and I'm talking with a paper daydream but think how cool it would be if one of us could get it to work.