Thanks for the eagle eye observation, Chuck. Fortunately, both small spacers and large spacers are identical, so there is a slotted spacer ready for the trailing truck. I had to pay sharp attention to all of the spacers because both the slot in the small versions and the tapped hole in the larger ones are NOT centered in the spacers. Because of the gears built into the left side drivers, the entire motor case is slightly off center to the right, so the tapped holes and slots had to be skewed to the left so they end up in the center of the unit. And your comment isn't picky if you help prevent a flood of bad words coming forth later in the assembly.
And, holy cow!! Ted!! I feel lucky enough that I got the two halves back together as it is! But I do see what you're considering - both seem like a lot of work, but here is my 2 cents on both versions; I'm not crazy about the second alteration, because you would not only have to move the wheel bearings, but also the idler pivot pin installed in the case, plus the shortened wheelbase may make the engine bounce more over switches & cross track. However the original suggestion isn't so bad, but it's a bit more of a machining challenge because the cluster gear pin is integral with the armature bearing plate. So you need to fabricate a new bearing plate and install it using the current attach holes (and probably drill a new indexing hole in the case), BUT if it doesn't work out so well, you can easily return the engine to the original configuration.
I'm just trying to Humpty Dumpty running again, so, sorry, that mod is out. But I did take this unique opportunity to paint the case black to better blend in, and I figured out a way to 'whitewall' my drivers using my drill press. And I'll give the body a custom paint job while I'm waiting for parts to arrive.