I cut my GG track about 1/8 to 1/4 inch longer than needed with the cut off wheels (1-1/2 and 2"). The cut will be at an angle, then I make the final cut. That way your dremel will be at the 90 degree angle to the end of the track for the final cut. I then open up the end of the rail where the track pin goes, with a track pin and then pull it out using a pair of pliers.
Use a full new wheel to make the 1st cuts of track. A wheel that is worn down will work to cut the final cuts. You can ware down a wheel to 3/8 to 1/2 inch and it will still cut an individual rail end.