The problem you will run into with all of the above ideas is the unpredictability of the sequencing of the E-Units in each engine. Even though the new electronic units are far more predictable then the old mechanical units they still have the old problem of coming up in different states from time to time.
The only way you can be sure of dependable direction control between the two engines is to install a four or six amp E unit in one engine and then using the DPDT switch that Rob spoke of above and a power harness between each engine. The DPDT switch will be placed in the motor drive loop of the slave engine where it will decide by you if it is to run as a slave off the engine with the larger E unit via the harness or off of it's own 2 amp E-unit. The harnesses will just go unused when the engines are operated independently.
Then you can reverse the motor wires in one engine so it will always run opposite direction of each other when married through the harness.
The reason for the larger E-unit is the extra power draw of two engines off of one E-unit not designed to service that much power.
You can always do what Rob suggest above and it will probably work most of the time, but then you will have to be dealing with the sequencing issue I mentioned periodically.
Good Luck and Have fun. It sounds like a fun project.