is there a way to operate this car on atlas track and what would I need?
Yes, you need a set of Atlas control rails.
is there a way to have the door stay open, if I can not get an operating track section?
Not to the best of my knowledge without breaking the door mechanism.
is there a way to open the door without the track section?
You would have to convert the car to TMCC operation, possibly using an Electric Railroad Mini Commander board, and then use a TMCC command base and Cab-1 to control it. The advantage is that you could then operate the car anywhere on the layout, even while moving at a high rate of speed.
I've converted several of these cars that way.