Ok, That is not the lower board. That is the upper power supply board. You burned Q-23. When you said pinched smoke and lower board, I thought you were talking about the smoke fan fets on the processor board which is the lower board.
Here is your problem though. If you pinched 5V to chassis ground there are other components on both those boards that can be bad. Bad as in partial shorts that overload the Power Supply board and damage Q-23.
You can replace it, but it wouldn't surprise me if the board is still overloaded when power is applied. You need to monitor current when you apply power after the fix. I normally do this out of the engine in a board tester. If current gets too high you need to shutdown and figure out the other issues. G