I thought that I would enjoy running multiple isolated loops of trains with my Legacy command control but I do have unwanted issues. My 13 x 14 layout is O tubular powered by ZWL. Accessories, lights, etc are run off of PW ZW.
Sometimes the "wrong" train will speed up, slow down, uncouple when I'm sending a command to a different track/engine or more especially when activating the whistle control. This happens with both my Legacy and my TMCC locomotives.
With conventional all I did was set the transformer power and enjoyed the trains, but with command control it seems that I have to constantly be watching for hiccups.
I understand now why so many operators only have one mainline. Makes it much easier and enjoyable. Either I need to run only one mainline or go back to conventional operation. It's not much fun chasing hiccups when running trains.