Joe,
Please confirm the following:
- The engine comes on immediately after power is applied
- If you then select the engine and press startup, it goes into command mode and can be operated under DCS from the remote's ENG screen
- When E-Stop is pressed, the track does not lose power
- The variable channel is wired normally, i.e., not in passive TIU mode
- There is no other power source feeding the tracks for the variable channel except through the TIU's variable channel input.
If all of the above are true, and the E-Stop does, indeed, turn off power to other channels, most likely the TIU has a hardware problem on that variable channel.
If, however, the E-Stop doesn't turn off any power to any channels, then most likely either the TIU or the remote has a hardware problem.