Justin I asked a fellow member of the forum who lives near me in Mass. about this same topic when I started converting to Kadee's last winter 2021. He has done his entire fleet of cars. Here's the recommendation he emailed me (copied and pasted below): His method definitely has worked out well for me.... On certain cars, specifically, the H21a Hoppers, I have altered his approach and just drilled new holes using the Kadee coupler box and a shim as a guide. It's not that his method didn't work, I just wanted the couplers up under the frames more to move the hoppers as close together as they could go. With new holes, the right angle stop on the Kadee coupler box cover is flush with and right on the car frame. If you don't want to have to start drilling out every car, then the following procedure works with minimal effort.
Yes Atlas decided to drill their holes slightly off for their own coupler. The easiest solution. Pick up some 2mm threaded screws. I use www.MonsterBolts.com. They have blackened, Phillips, pan head screws. After your coupler is assembled. Drill the front and rear hole out slightly bigger with a #43 bit. The 2mm screws thread into the Atlas holes. The screws are a little smaller than a 2 56. Between the size difference and reaming out the holes in the Kadee. It should give you a little wiggle room. The trick is to use a longer screw than needed. Works good with boxcars. Catch one screw by a couple threads. Now get the other screw in the hole and angle the coupler or force the screw to stand straight in the hole. This is why a Phillips is a must. Catch the second screw. Now alternately tighten each screw and the coupler will walk it’s way on. It sticks out slightly but it’s really not noticeable in operation. Beats the heck out of drilling and tapping. One Micromark shim seems to be the standard on every car. They only car that should require drilling and tapping. Is the Atlas outside braced boxcar.