I thought I was having problems with my A.F. Challenger. When pulling the whistle slide all the way down and holding it there the engines whistle would break up. It would cut on and off over and over again, and then the would suddenly run radically fast. So I sent it to Lionel Service NC in Concord, NC. They found a harness had come loose from the motherboard ran it 2 hours without fail. Cost me $ 89.60. So I ran the Challenger again and two of my Heritage ES44AC Diesels and have the SAME PROBLEM! I bought my Legacy Command set in Feb., 2012. I up graded it to V1.5. The original rechargeable batteries are getting weak and will only show one mark on the battery scale. I replaced them with AA batteries for now and thought that was the problem. I will get three new rechargeable batteries, and turned off the charging switch on the bottom of the base so I wouldn't fry the AA batteries. I also tried changing channels on the Command Base, that didn't help. This all started about a month ago.
Has anyone had this problem? Why would all three units act the same. I have a 8'X24' layout with inner and out loops and keep the track clean. Made sure they are programed to Legacy. I have feeders every 5' to 6' on both loops. I have one TPC 400, two 180 watt power supply. I guess I will call Lionel again and send my 990 Command set back to get it checked out.