Apologies for the delay in getting back on this project. Just to review, the second video shows the problem. the locomotive runs a few seconds and then stops and signals a drive motor overload.
Here is the update:
1) Per Vernon's suggestion, I tested track voltage both on the layout and on my test track. The problem repeats in each case with 18v applied so it appears we do not have an undervoltage issue.
2) Per the suggestion from Pat and GRJ, to be sure I do not have a drive train issue, trash, chipped tooth, etc., I took the gear box apart and lubricated everything, looked for any issues, and reassembled. Multiple times, i turned the flywheel slowly by hand and listened for any click or noise. also tried to feel any occasional resistance. No luck in finding anything like the skipping tooth issue.
3) the last suggestion involved testing the current draw of the motor. that is the second video. At start the motor draws about 260 ma and goes to 300 as the speed increases. I let it run for several minutes at this speed to see if something might "run in" but the problem still repeats. I also checked the four-wire tach feedback connector from the motor to the board and all wires had continuity. I hoped this might be the issue but no joy. So, the motor seems to be ok.
4) I put a small mark on the flywheel and went through the failure test mode multiple times and there did not seem to be a pattern on when the issue occurred and where the flywheel stopped. this is probably a red herring attempt on my part because I have no idea how a revolution of the flywheel might relate to the motor gear and the other gears revolution wise, but it was an interesting experiment. 
5) Unless I have missed something, it seems we are back to the board and possibly testing it. Are there any specs on signals I should measure at various connector points, related to the motor and feedback? Other features seem to work fine (smoke, lights, etc.)
??? In Pat's words "I suspect something else is going on here..." but I wonder what else I can test.