Rick,
If you don't check the voltages correctly you'll be fooled into thinking that there is no problem, when there actually might be one.
Track voltage, from center rail to outside rail, should read exactly the same as the voltage across the posts on the transformer connected to it, as long as there is nothing on the track -- no engines, no lighted cars, no operating cars, etc. This is the 'no load' voltage and will be the same no matter where it's measured on the layout.
Once you place something on the track that draws current, like the rolling stock mentioned above, track voltage will drop. Slightly, if you have nice tight connections between track sections, enough extra power drops around the layout to compensate for the length of the track, and rolling stock that draws low current such as a lighted caboose. More, maybe much more, if the track is dirty or doesn't connect together well, if there aren't sufficient extra power drops, or the item on the track draws larger current, such as a full string of incandescent-lighted passenger cars, or a large postwar locomotive.
It will drop less near the transformer. It will drop more at the far end of the layout because of distance, especially if there aren't enough drops, or wire has been used for the drops that is too skinny.
You should check the voltage from center to outside rail at your slow spots, with the train or cars on the track and operating on top of those spots. Instead of reading 'no-load' voltage you'll now be reading 'at-load' voltage.
This is the best way to get an accurate reading of how bad the slow spots are.
Let us know how it turns out.
Mike