I sent in my new atlas rsd 4-5 and got it back from atlas and the non running problem was fixed. My one question is that a note with it says to use the cab 1 mode. For some reason every feature except move works in tmcc mode and every feature including move works in cab one. The reason explained to me was you can;t do the feature set in tmcc mode when programing the engine for its feature such as #8 for diesel and without that put in after a change in cab number causes the engine to not move.
You need to have the handheld in cab 1 to do the aux code then you can go back to tmcc. I am spoiled with the modules that do all this for you with the legacy system.