Since I am new to MTH's DCS, I think it my situation might be 'operator error'.
This past Saturday night I set up two ovals of FasTrack (O-84 and O-72 w/ 3 pieces of 30" straights on each side).
Connected the Z-4000 to the TIU as follows:
1) Track #1 (LH Throttle) to TIU Fixed #1 input. #1 Output to outside oval.
2) Track #2 (RH Throttle) to TIU Fixed #2 input. #2 Output to outside oval.
3) Installed new batteries into the DCS Remote, then powered up #1 to check power to the TIU. (Good to go).
4) Powered on the Remote and scrolled through the options for an initial look, while also trying to go through the user's guide.
5) Turned off the track power and installed my sole PS-2 Locomotive.
6) Re-applied power, and had the remote 'look' for the engine. "No Engine Found".
7) Scrolled through the menu again after some more reading and checked the 'track'. "Engine won't be found on track #1 if the TIU is looking for it on track #2". So I make the correction - and after a couple of minutes 'viola' engine found, lights, start up sounds, etc. And run it around for a while.
8) Place the loco on track #2, power up track #2, signal the TIU to look on track #2 - after about two minutes, 'viola' engine is found again, etc.
My first question, how long does it usually take the TIU to 'find' the locomotive?
Next, now that the TIU has seen the loco and the track addresses, will I have to go through the procedure again? (Barring the PS-2 battery failing).
Monday, I moved the wiring over to Varible #1 and #2.
1) Placed same locomotive on track#1 to test in conventional mode. Applied power (18/19 Volts), went to the remote, found track variable #1 scrolled up the voltage slowly to get the loco moving (went all the way to 19V) - nothing. Powered down, then back up and tried again - nothing.
2) Moved the loco to track two, did the above listed and had the same thing.
3) Disconnected the track leads, applied power and checked with multimeter. Only had 1.3 volts at both tracks.
4) Started reading again, scratching my head, reading again and rechecking for voltage. Same voltage readings.
5) Next I go to the 'golden book' by Allan and start reading. There I find, clearly stated, to set the Z-4000 to 22 volts(did I miss something in the supplied user's guide?). Now I think "I got'cha!". Go through the above again and - nope "It still got me".
6) Back to reading.
7) Back to the Remote. Started through the menu's checking that the track's where active (TIU Var & Fix)(Z4K1 Trk 1, 2 & Fixed). Remote gives me "thumbs up".
8) To satisfy my troubleshooting itch, I went back and powered up Variable 1(Z4K track 1{LH throttle}), then to the Remote and selected TIU1 VAR2. Started thumb wheeling up the voltage and "viola" I had locomotion!
9) Powered down, moved the locomotive to track 2, powered up Variable 2(Z4K track 2{RH throttle}), went to the remote and selected TIU1 Var1 - "viola" locomotion again!
10) In the remote, renamed TIU1 VAR1 to TIU1 VAR2 and vis-versa.
Has anyone come across this Track Address issue? If so, while my solution is working for me, is this a real fix? And, should I have had the issue? I'm not mad or disappointed. I am actually, kind of happy, because it forced me to do more reading. Which should help me understand the system better. (But, 'will I remember?' - 'That is the question!'  
The "System" is 4.20 Rev L.
Last thing on Monday was I switched the leads back to the fixed positions, and had this issue(which I intend to read on this week end);
1) in going back to command mode, the engine was responding to throttle, direction and headlight on and off - but no sound or smoke unit, and did not respond to the power-up/power-down buttons. (I will state that I made sure the locomotive was in the neutral postion when I concluded conventional operation). I powered down the Z4K, then powered up again(allowing about 30 seconds between moves) - same thing.
2) When I re-applied the power a third time, I had the Remote/TIU search for the engine again. Full functionality returned. (I will also state that I had the loco battery on charge for about 4 hours on Staurday and the remote was indicating that the battery is good - the engine has sat since purchase at York in Oct '10).
Again, not mad or disappointed - I just need to learn the system and remember how to use it.
Hey Allan, judging from the parts of your book that I was in this past weekend - two thumbs way up! When I 'hit the books again' this weekend, I think I will read a piece of the DCS guide, your book - same area. Then play with the remote and engine.
Any advise or comments would be greatly appreciated.
Henry J